Transcript: lnc-CTSZ-12:2

Basic information

LNCipedia transcript ID: lnc-CTSZ-12:2 
LNCipedia gene ID: lnc-CTSZ-12
Ensembl Gene ID: ENSG00000268333
Ensembl Transcript ID: ENST00000601795
Location (hg38): chr20:58833809-58836529
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1153 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT080584; ENST00000601795.1
Alternative gene names: ENSG00000268333.1; RP4-806M20.3; SANG; NESP-AS; NESPAS; GNAS1AS; NCRNA00075; AL132655.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.0118 non-coding 
CPAT coding probability 4.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTSZ-12:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTSZ-9:2
4.0 GNAS-AS1:11
4.1 GNAS-AS1:11
5.0 GNAS-AS1:11
5.1 lnc-SPATA2-112:2
5.2 lnc-CTSZ-12:2