Transcript: lnc-CTSZ-2:13

Basic information

LNCipedia transcript ID: lnc-CTSZ-2:13 
LNCipedia gene ID: lnc-CTSZ-2
Ensembl Gene ID: ENSG00000270951
Ensembl Transcript ID: ENST00000605044
Location (hg38): chr20:58876592-58876981
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 390 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT080590; ENST00000605044.1
Alternative gene names: ENSG00000270951.1; RP1-309F20.4; AL121917.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.1713 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTSZ-2:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTSZ-8:1
4.0 lnc-CTSZ-8:1
4.1 lnc-CTSZ-2:13
5.0 lnc-CTSZ-2:13
5.1 lnc-SPATA2-113:13
5.2 lnc-CTSZ-2:13