Transcript: lnc-CTSZ-2:2

Basic information

LNCipedia transcript ID: lnc-CTSZ-2:2 
LNCipedia gene ID: lnc-CTSZ-2
Ensembl Gene ID: ENSG00000225806
Ensembl Transcript ID: ENST00000424434
Location (hg38): chr20:58881750-58888809
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 367 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424434.1; RP1-309F20.3-002; OTTHUMT00000267998.1; NONHSAT080591
Alternative gene names: ENSG00000225806.1; RP1-309F20.3; OTTHUMG00000137369.1; ENSG00000225806.3; ENSG00000225806.7; AL121917.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -356.1673 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTSZ-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTSZ-2:2
4.0 lnc-CTSZ-2:2
4.1 lnc-CTSZ-2:2
5.0 lnc-CTSZ-2:2
5.1 lnc-SPATA2-113:10
5.2 lnc-CTSZ-2:2