Transcript: lnc-CTU2-5:1

Basic information

LNCipedia transcript ID: lnc-CTU2-5:1 
LNCipedia gene ID: lnc-CTU2-5
Ensembl Gene ID: ENSG00000182376
Ensembl Transcript ID: ENST00000333666
RefSeq ID: NR_120387
Location (hg38): chr16:88742767-88745748
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2137 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000333666.1; RP5-1142A6.8-002; OTTHUMT00000423098.1; NONHSAT144429; NR_120387; NR_120387.1
Alternative gene names: ENSG00000182376.2; RP5-1142A6.8; OTTHUMG00000173435.1; AC138028.1; LOC339059


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.3456 non-coding 
CPAT coding probability 80.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CTU2-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTU2-5:1
4.0 lnc-CTU2-5:1
4.1 lnc-CTU2-5:1
5.0 lnc-CTU2-5:1
5.1 lnc-SPG7-45:1
5.2 lnc-CTU2-5:1