Transcript: lnc-CTXN1-1:1

Basic information

LNCipedia transcript ID: lnc-CTXN1-1:1 
LNCipedia gene ID: lnc-CTXN1-1
Ensembl Gene ID: ENSG00000260500
Ensembl Transcript ID: ENST00000564226
Location (hg38): chr19:7918652-7919157
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 506 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564226.1; CTD-3193O13.1-001; OTTHUMT00000430897.1; NONHSAT060856
Alternative gene names: ENSG00000260500.1; CTD-3193O13.1; OTTHUMG00000175718.1; AC010336.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.2196 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CTXN1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTXN1-1:1
4.0 lnc-CTXN1-1:1
4.1 lnc-CTXN1-1:1
5.0 lnc-CTXN1-1:1
5.1 lnc-TIMM44-3:1
5.2 lnc-CTXN1-1:1