Transcript: lnc-CTXN1-4:2

Basic information

LNCipedia transcript ID: lnc-CTXN1-4:2 
LNCipedia gene ID: lnc-CTXN1-4
Ensembl Gene ID: ENSG00000214248
Ensembl Transcript ID: ENST00000539278
Location (hg38): chr19:7898804-7903542
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4739 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539278.1
Alternative gene names: ENSG00000214248.2; CTD-3193O13.12; AC010336.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1788.2846 coding 
CPAT coding probability 99.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CTXN1-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC010336.2-4:1
4.1 lnc-AC010336.2-4:1
5.0 lnc-AC010336.2-4:1
5.1 lnc-TIMM44-6:1
5.2 lnc-CTXN1-4:2