Transcript: lnc-CTXND1-2:1

Basic information

LNCipedia transcript ID: lnc-CTXND1-2:1 
LNCipedia gene ID: lnc-CTXND1-2
Ensembl Gene ID: ENSG00000258010
Ensembl Transcript ID: ENST00000548231
Location (hg38): chr15:80433795-80445152
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1891 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548231.1; RP11-210M15.1-001; OTTHUMT00000403632.1; NONHSAT047705
Alternative gene names: ENSG00000258010.1; RP11-210M15.1; OTTHUMG00000169345.1; ENSG00000258010.2; ENSG00000258010.3; AC016705.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.6415 non-coding 
CPAT coding probability 40.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CTXND1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-210M15.2.1-2:1
4.0 lnc-RP11-210M15.2.1-2:1
4.1 lnc-RP11-210M15.2.1-2:1
5.0 lnc-RP11-210M15.2.1-2:1
5.1 lnc-CHRNA3-39:1
5.2 lnc-CTXND1-2:1