Transcript: lnc-CUBN-1:1

Basic information

LNCipedia transcript ID: lnc-CUBN-1:1 
LNCipedia gene ID: lnc-CUBN-1
Ensembl Gene ID: ENSG00000225213
Ensembl Transcript ID: ENST00000421480
Location (hg38): chr10:16721352-16748377
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 697 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421480.2; RP11-197M22.2-001; OTTHUMT00000047004.3; NONHSAT011599
Alternative gene names: ENSG00000225213.2; RP11-197M22.2; OTTHUMG00000017739.3; AC073367.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.9935 non-coding 
CPAT coding probability 2.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CUBN-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CUBN-1:1
4.0 lnc-CUBN-1:1
4.1 lnc-CUBN-1:1
5.0 lnc-CUBN-1:1
5.1 lnc-MPP7-130:1
5.2 lnc-CUBN-1:1