Transcript: lnc-CUL2-1:1

Basic information

LNCipedia transcript ID: lnc-CUL2-1:1 
LNCipedia gene ID: lnc-CUL2-1
Ensembl Gene ID: ENSG00000230534
Ensembl Transcript ID: ENST00000457255
Location (hg38): chr10:35100890-35127020
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 521 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457255.1; RP11-297A16.2-003; OTTHUMT00000047548.1; NONHSAT012718
Alternative gene names: ENSG00000230534.1; RP11-297A16.2; OTTHUMG00000017952.1; ENSG00000230534.2; ENSG00000230534.6; AL392046.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.0053 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CUL2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CUL2-1:1
4.0 lnc-CUL2-1:1
4.1 lnc-CUL2-1:1
5.0 lnc-CUL2-1:1
5.1 lnc-CUL2-1:1
5.2 lnc-CUL2-1:1