Transcript: lnc-CUL2-1:5

Basic information

LNCipedia transcript ID: lnc-CUL2-1:5 
LNCipedia gene ID: lnc-CUL2-1
Location (hg38): chr10:35098027-35101062
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 315 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017950; ENST00000423819.1; RP11-297A16.2-002; OTTHUMT00000047547.1; NONHSAT012716
Alternative gene names: XLOC_008777; linc-CUL2-1; ENSG00000230534.1; RP11-297A16.2; OTTHUMG00000017952.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.9339 non-coding 
CPAT coding probability 4.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CUL2-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CUL2-1:4
3.1 lnc-CUL2-1:5
4.0 lnc-CUL2-1:5
4.1 lnc-CUL2-1:5
5.0 lnc-CUL2-1:5
5.1 lnc-CUL2-1:5
5.2 lnc-CUL2-1:5