Transcript: lnc-CWC15-3:1

Basic information

LNCipedia transcript ID: lnc-CWC15-3:1 
LNCipedia gene ID: lnc-CWC15-3
Ensembl Gene ID: ENSG00000256469
Ensembl Transcript ID: ENST00000545958
Location (hg38): chr11:94874052-94925521
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 593 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545958.1; RP11-856F16.2-001; OTTHUMT00000396687.1; NONHSAT023745
Alternative gene names: ENSG00000256469.1; RP11-856F16.2; OTTHUMG00000167864.1; AP002383.3; AP002383.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.3684 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CWC15-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SESN3-3:1
4.0 lnc-SESN3-3:1
4.1 lnc-SESN3-3:1
5.0 lnc-SESN3-3:1
5.1 lnc-NOX4-54:1
5.2 lnc-CWC15-3:1