Transcript: lnc-CXCL12-2:1

Basic information

LNCipedia transcript ID: lnc-CXCL12-2:1 
LNCipedia gene ID: lnc-CXCL12-2
Ensembl Gene ID: ENSG00000237590
Ensembl Transcript ID: ENST00000437014
Location (hg38): chr10:44259602-44261813
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 841 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017963; ENST00000437014; ENST00000437014.1; RP11-20J15.2-001; OTTHUMT00000047740.1; NONHSAT013027
Alternative gene names: XLOC_008794; linc-ZNF32-4; ENSG00000237590; RP11-20J15.2; ENSG00000237590.1; OTTHUMG00000018055.1; AL137026.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.7147 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXCL12-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXCL12-2:1
3.1 lnc-CXCL12-2:1
4.0 lnc-CXCL12-2:1
4.1 lnc-CXCL12-2:1
5.0 lnc-CXCL12-2:1
5.1 lnc-LRRC18-83:1
5.2 lnc-CXCL12-2:1