Transcript: lnc-CXCL12-3:1

Basic information

LNCipedia transcript ID: lnc-CXCL12-3:1 
LNCipedia gene ID: lnc-CXCL12-3
Ensembl Gene ID: ENSG00000234580
Ensembl Transcript ID: ENST00000456722
Location (hg38): chr10:44591208-44602104
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 732 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017965; ENST00000456722; ENST00000456722.1; RP11-733D4.1-001; OTTHUMT00000047743.1; NONHSAT013039
Alternative gene names: XLOC_008796; linc-CXCL12-3; ENSG00000234580; RP11-733D4.1; ENSG00000234580.1; OTTHUMG00000018058.1; AL356157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.912 non-coding 
CPAT coding probability 2.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXCL12-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXCL12-3:1
3.1 lnc-CXCL12-3:1
4.0 lnc-CXCL12-3:1
4.1 lnc-CXCL12-3:1
5.0 lnc-CXCL12-3:1
5.1 lnc-LRRC18-78:1
5.2 lnc-CXCL12-3:1