Transcript: lnc-CXCL16-1:1

Basic information

LNCipedia transcript ID: lnc-CXCL16-1:1 
LNCipedia gene ID: lnc-CXCL16-1
Location (hg38): chr17:4731756-4732371
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 480 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000570493.1; RP11-314A20.5-001; OTTHUMT00000439575.1; NONHSAT145110
Alternative gene names: ENSG00000261898.1; RP11-314A20.5; OTTHUMG00000177897.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.7897 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXCL16-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXCL16-1:1
4.0 lnc-CXCL16-1:1
4.1 lnc-CXCL16-1:1
5.0 lnc-CXCL16-1:1
5.1 lnc-PHF23-56:1
5.2 lnc-CXCL16-1:1