Transcript: lnc-CXCL8-1:1

Basic information

LNCipedia transcript ID: lnc-CXCL8-1:1 
LNCipedia gene ID: lnc-CXCL8-1
Ensembl Gene ID: ENSG00000228277
Ensembl Transcript ID: ENST00000436089
Location (hg38): chr4:73710302-73714527
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007551; ENST00000436089; ENST00000436089.1; AC112518.3-001; OTTHUMT00000322216.2; NONHSAT096866
Alternative gene names: XLOC_003573; linc-IL8-1; ENSG00000228277; AC112518.3; ENSG00000228277.1; OTTHUMG00000151319.2; AC112518.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.5819 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXCL8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL8-1:1
3.1 lnc-IL8-1:1
4.0 lnc-IL8-1:1
4.1 lnc-IL8-1:1
5.0 lnc-IL8-1:1
5.1 lnc-ART3-37:1
5.2 lnc-CXCL8-1:1