Transcript: lnc-CXCR5-1:12

Basic information

LNCipedia transcript ID: lnc-CXCR5-1:12 
LNCipedia gene ID: lnc-CXCR5-1
Location (hg38): chr11:118791849-118794862
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2255 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000004001.1|MICT00000068462.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -17.9104 non-coding 
CPAT coding probability 6.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXCR5-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CXCR5-1:12
5.0 lnc-CXCR5-1:12
5.1 lnc-HMBS-15:12
5.2 lnc-CXCR5-1:12