Transcript: lnc-CXCR5-1:4

Basic information

LNCipedia transcript ID: lnc-CXCR5-1:4 
LNCipedia gene ID: lnc-CXCR5-1
Ensembl Gene ID: ENSG00000278376
Ensembl Transcript ID: ENST00000610705
Location (hg38): chr11:118791254-118793137
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1884 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000610705.1
Alternative gene names: ENSG00000278376.1; RP11-158I9.8; AP004609.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.3251 non-coding 
CPAT coding probability 6.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXCR5-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CXCR5-1:4
4.1 lnc-CXCR5-1:4
5.0 lnc-CXCR5-1:4
5.1 lnc-HMBS-15:3
5.2 lnc-CXCR5-1:4