Transcript: lnc-CXCR5-1:6

Basic information

LNCipedia transcript ID: lnc-CXCR5-1:6 
LNCipedia gene ID: lnc-CXCR5-1
Location (hg38): chr11:118791041-118797646
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6606 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000004001.1|ENCT00000072338.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.3251 non-coding 
CPAT coding probability 2.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXCR5-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CXCR5-1:6
5.0 lnc-CXCR5-1:6
5.1 lnc-HMBS-15:2
5.2 lnc-CXCR5-1:6