Transcript: lnc-CXorf36-46:13

Basic information

LNCipedia transcript ID: lnc-CXorf36-46:13 
LNCipedia gene ID: lnc-CXorf36-46
Ensembl Gene ID: ENSG00000269902
Ensembl Transcript ID: ENST00000602277
Location (hg38): chrX:45764772-45765299
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 528 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT136808; ENST00000602277.1
Alternative gene names: ENSG00000269902.1; RP6-99M1.3; Lnc-Ang362; AC234772.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.3513 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXorf36-46:13 no no no no

Available literature

  1. Wang (2018), Long non-coding RNA expression profiles reveals AK098783 is a biomarker to predict poor prognosis in patients with colorectal cancer., Jpn. J. Clin. Oncol.
  2. Leung (2013), Novel long noncoding RNAs are regulated by angiotensin II in vascular smooth muscle cells., Circ. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXorf36-6:1
4.0 lnc-CXorf36-6:1
4.1 MIR222HG:29
5.0 MIR222HG:29
5.1 lnc-PCSK1N-46:13
5.2 lnc-CXorf36-46:13