Transcript: lnc-CXorf49-4:2

Basic information

LNCipedia transcript ID: lnc-CXorf49-4:2 
LNCipedia gene ID: lnc-CXorf49-4
Location (hg38): chrX:71775120-71784378
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4113 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: TCONS_00017068; ENST00000515698
Alternative gene names: XLOC_008182; linc-CXorf49B-2; ENSG00000248135; BX276092.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.7574 non-coding 
CPAT coding probability 34.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CXorf49-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXCR3-4:2
3.1 lnc-CXCR3-4:2
4.0 lnc-CXCR3-4:2
4.1 lnc-CXCR3-4:2
5.0 lnc-CXCR3-4:2
5.1 lnc-ZMYM3-29:2
5.2 lnc-CXorf49-4:2