Transcript: lnc-CYB561-5:2

Basic information

LNCipedia transcript ID: lnc-CYB561-5:2 
LNCipedia gene ID: lnc-CYB561-5
Ensembl Gene ID: ENSG00000233635
Ensembl Transcript ID: ENST00000435892
Location (hg38): chr17:63193930-63197785
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 305 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435892.1; AC037445.1-001; OTTHUMT00000255430.1; NONHSAT055192
Alternative gene names: ENSG00000233635.2; AC037445.1; OTTHUMG00000132317.2; AC015923.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.9919 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYB561-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYB561-5:2
4.0 lnc-CYB561-5:2
4.1 lnc-CYB561-5:2
5.0 lnc-CYB561-5:2
5.1 lnc-CYB561-5:2
5.2 lnc-CYB561-5:2