Transcript: lnc-CYB5A-1:1

Basic information

LNCipedia transcript ID: lnc-CYB5A-1:1 
LNCipedia gene ID: lnc-CYB5A-1
Ensembl Gene ID: ENSG00000260569
Ensembl Transcript ID: ENST00000580403
Location (hg38): chr18:74211391-74240555
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580403.1; RP11-669I1.1-002; OTTHUMT00000444239.1; NONHSAT059864
Alternative gene names: ENSG00000260569.2; RP11-669I1.1; OTTHUMG00000176208.2; AC090398.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.8549 non-coding 
CPAT coding probability 2.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYB5A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYB5A-1:1
4.0 lnc-CYB5A-1:1
4.1 lnc-CYB5A-1:1
5.0 lnc-CYB5A-1:1
5.1 lnc-PQLC1-53:1
5.2 lnc-CYB5A-1:1