Transcript: lnc-CYB5A-1:2

Basic information

LNCipedia transcript ID: lnc-CYB5A-1:2 
LNCipedia gene ID: lnc-CYB5A-1
Ensembl Gene ID: ENSG00000260569
Ensembl Transcript ID: ENST00000562795
Location (hg38): chr18:74211391-74212569
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1179 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562795.1; RP11-669I1.1-001; OTTHUMT00000431631.1
Alternative gene names: ENSG00000260569.2; RP11-669I1.1; OTTHUMG00000176208.2; AC090398.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.4833 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYB5A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYB5A-1:2
4.0 lnc-CYB5A-1:2
4.1 lnc-CYB5A-1:2
5.0 lnc-CYB5A-1:2
5.1 lnc-PQLC1-53:2
5.2 lnc-CYB5A-1:2