Transcript: lnc-CYB5D2-4:1

Basic information

LNCipedia transcript ID: lnc-CYB5D2-4:1 
LNCipedia gene ID: lnc-CYB5D2-4
Ensembl Gene ID: ENSG00000274363
Ensembl Transcript ID: ENST00000616113
Location (hg38): chr17:4267691-4268430
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 740 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616113.1
Alternative gene names: ENSG00000274363.1; RP11-104O19.4; AC087742.2; AC087742.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -88.6223 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYB5D2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CYB5D2-4:1
4.1 lnc-CYB5D2-4:1
5.0 lnc-CYB5D2-4:1
5.1 lnc-RPA1-77:2
5.2 lnc-CYB5D2-4:1