Transcript: lnc-CYB5R2-3:15

Basic information

LNCipedia transcript ID: lnc-CYB5R2-3:15 
LNCipedia gene ID: lnc-CYB5R2-3
Ensembl Gene ID: ENSG00000251364
Ensembl Transcript ID: ENST00000622955
Location (hg38): chr11:7427266-7504872
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2703 bp
Exons: 8
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622955.3
Alternative gene names: ENSG00000251364.6; CTD-2516F10.2; AC107884.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.4521 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYB5R2-3:15 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CYB5R2-3:15
4.1 lnc-CYB5R2-3:15
5.0 lnc-CYB5R2-3:15
5.1 lnc-OR10A6-11:9
5.2 lnc-CYB5R2-3:15