Transcript: lnc-CYGB-3:5

Basic information

LNCipedia transcript ID: lnc-CYGB-3:5 
LNCipedia gene ID: lnc-CYGB-3
Ensembl Gene ID: ENSG00000267546
Ensembl Transcript ID: ENST00000607136
Location (hg38): chr17:76551780-76552931
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 538 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607136.1
Alternative gene names: ENSG00000267546.2; RP11-666A8.8; AC015802.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.5519 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYGB-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ST6GALNAC2-3:4
4.0 lnc-ST6GALNAC2-3:4
4.1 lnc-ST6GALNAC2-3:4
5.0 lnc-ST6GALNAC2-3:4
5.1 lnc-ST6GALNAC2-3:4
5.2 lnc-CYGB-3:5