Transcript: lnc-CYLC2-1:1

Basic information

LNCipedia transcript ID: lnc-CYLC2-1:1 
LNCipedia gene ID: lnc-CYLC2-1
Location (hg38): chr9:103243726-103253170
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 202 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015729; ENST00000425157; ENST00000425157.1; RP11-436F21.3-001; OTTHUMT00000053465.1; NONHSAT133776
Alternative gene names: XLOC_007496; linc-SMC2-2; ENSG00000228795; RP11-436F21.3; ENSG00000228795.1; OTTHUMG00000020398.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.9378 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYLC2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYLC2-1:1
3.1 lnc-CYLC2-1:1
4.0 lnc-CYLC2-1:1
4.1 lnc-CYLC2-1:1
5.0 lnc-CYLC2-1:1
5.1 lnc-FAM120A-162:2
5.2 lnc-CYLC2-1:1