Transcript: lnc-CYLC2-6:1

Basic information

LNCipedia transcript ID: lnc-CYLC2-6:1 
LNCipedia gene ID: lnc-CYLC2-6
Location (hg38): chr9:102290120-102290912
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 713 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015728; ENST00000448515; ENST00000448515.1; RP11-402M4.1-001; OTTHUMT00000053458.1; NONHSAT133762
Alternative gene names: XLOC_007495; linc-CYLC2-1; ENSG00000227889; RP11-402M4.1; ENSG00000227889.1; OTTHUMG00000020391.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.343 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYLC2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf107-1:1
3.1 lnc-C9orf107-1:1
4.0 lnc-C9orf107-1:1
4.1 lnc-C9orf107-1:1
5.0 lnc-C9orf107-1:1
5.1 lnc-FAM120A-156:1
5.2 lnc-CYLC2-6:1