Transcript: lnc-CYR61-1:1

Basic information

LNCipedia transcript ID: lnc-CYR61-1:1 
LNCipedia gene ID: lnc-CYR61-1
Ensembl Gene ID: ENSG00000230285
Ensembl Transcript ID: ENST00000426794
Location (hg38): chr1:85599131-85600734
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 255 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000244; ENST00000426794; ENST00000426794.1; RP11-290M5.2-001; OTTHUMT00000029185.1; NONHSAT004257
Alternative gene names: XLOC_000277; linc-CLCA2-3; ENSG00000230285; RP11-290M5.2; ENSG00000230285.1; OTTHUMG00000010575.1; AC092807.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -280.852 non-coding 
CPAT coding probability 3.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYR61-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYR61-1:1
3.1 lnc-CYR61-1:1
4.0 lnc-CYR61-1:1
4.1 lnc-CYR61-1:1
5.0 lnc-CYR61-1:1
5.1 lnc-SAMD13-23:3
5.2 lnc-CYR61-1:1