Transcript: lnc-CYS1-1:1

Basic information

LNCipedia transcript ID: lnc-CYS1-1:1 
LNCipedia gene ID: lnc-CYS1-1
Ensembl Gene ID: ENSG00000260077
Ensembl Transcript ID: ENST00000567540
Location (hg38): chr2:10039092-10040663
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1572 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567540.1; RP11-254F7.2-001; OTTHUMT00000430908.1; NONHSAT069083
Alternative gene names: ENSG00000260077.1; RP11-254F7.2; OTTHUMG00000175729.1; AC104794.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.829 non-coding 
CPAT coding probability 7.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYS1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYS1-1:1
4.0 lnc-CYS1-1:1
4.1 lnc-CYS1-1:1
5.0 lnc-CYS1-1:1
5.1 lnc-RAD51AP2-107:16
5.2 lnc-CYS1-1:1