Transcript: lnc-CYS1-1:18

Basic information

LNCipedia transcript ID: lnc-CYS1-1:18 
LNCipedia gene ID: lnc-CYS1-1
Location (hg38): chr2:10034414-10036780
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 244 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00004141
Alternative gene names: XLOC_001984; linc-YWHAQ-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.6018 non-coding 
CPAT coding probability 6.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYS1-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYS1-1:2
3.1 lnc-CYS1-2:2
4.0 lnc-CYS1-2:2
4.1 lnc-CYS1-1:18
5.0 lnc-CYS1-1:18
5.1 lnc-RAD51AP2-107:19
5.2 lnc-CYS1-1:18