Transcript: lnc-CYSTM1-1:12

Basic information

LNCipedia transcript ID: lnc-CYSTM1-1:12 
LNCipedia gene ID: lnc-CYSTM1-1
Location (hg38): chr5:140167699-140172861
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 458 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00010805
Alternative gene names: XLOC_004577; linc-C5orf32-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.0091 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CYSTM1-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf32-1:12
3.1 lnc-C5orf32-1:12
4.0 lnc-C5orf32-1:12
4.1 lnc-C5orf32-1:12
5.0 lnc-C5orf32-1:12
5.1 lnc-EIF4EBP3-17:12
5.2 lnc-CYSTM1-1:12