Transcript: lnc-DAAM2-9:11

Basic information

LNCipedia transcript ID: lnc-DAAM2-9:11 
LNCipedia gene ID: lnc-DAAM2-9
Ensembl Gene ID: ENSG00000204091
Ensembl Transcript ID: ENST00000373170
Location (hg38): chr6:40378337-40379885
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1165 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000373170.2; TDRG1-002; OTTHUMT00000040484.1
Alternative gene names: ENSG00000204091.3; TDRG1; OTTHUMG00000014660.1; ENSG00000204091.7; LINC00532; lincRNA-NR_024015


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.4029 non-coding 
CPAT coding probability 6.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DAAM2-9:11 no no no no

Available literature

  1. Jiang (2015), Novel insights into a treatment for aplastic anemia based on the advanced proliferation of bone marrow‑derived mesenchymal stem cells induced by fibroblast growth factor 1., Mol Med Rep
  2. Liu (2015), Carboplatin-docetaxel-induced activity against ovarian cancer is dependent on up-regulated lncRNA PVT1., Int J Clin Exp Pathol
  3. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  4. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  5. Fan (2014), The has-miR-526b binding-site rs8506G>a polymorphism in the lincRNA-NR_024015 exon identified by GWASs predispose to non-cardia gastric cancer risk., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DAAM2-3:5
4.0 TDRG1:11
4.1 TDRG1:11
5.0 TDRG1:11
5.1 lnc-TREML4-19:11
5.2 lnc-DAAM2-9:11