Transcript: lnc-DAAM2-9:12

Basic information

LNCipedia transcript ID: lnc-DAAM2-9:12 
LNCipedia gene ID: lnc-DAAM2-9
RefSeq ID: NR_024015
Location (hg38): chr6:40378424-40379892
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1085 bp
Exons: 2
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011119; NR_024015; NR_024015.1
Alternative gene names: XLOC_005285; linc-TSPO2-2; LINC00532; lincRNA-NR_024015; TDRG1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.4029 non-coding 
CPAT coding probability 6.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DAAM2-9:12 no no no no

Available literature

  1. Jiang (2015), Novel insights into a treatment for aplastic anemia based on the advanced proliferation of bone marrow‑derived mesenchymal stem cells induced by fibroblast growth factor 1., Mol Med Rep
  2. Liu (2015), Carboplatin-docetaxel-induced activity against ovarian cancer is dependent on up-regulated lncRNA PVT1., Int J Clin Exp Pathol
  3. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  4. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  5. Fan (2014), The has-miR-526b binding-site rs8506G>a polymorphism in the lincRNA-NR_024015 exon identified by GWASs predispose to non-cardia gastric cancer risk., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DAAM2-3:6
3.1 lnc-DAAM2-3:7
4.0 TDRG1:12
4.1 TDRG1:12
5.0 TDRG1:12
5.1 lnc-TREML4-19:12
5.2 lnc-DAAM2-9:12