Transcript: lnc-DAPK1-7:1

Basic information

LNCipedia transcript ID: lnc-DAPK1-7:1 
LNCipedia gene ID: lnc-DAPK1-7
Ensembl Gene ID: ENSG00000204446
Ensembl Transcript ID: ENST00000623052
Location (hg38): chr9:87148644-87159556
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3239 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623052.1
Alternative gene names: ENSG00000204446.4; C9orf170


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -65.6433 non-coding 
CPAT coding probability 25.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DAPK1-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C9orf170-7:1
4.1 lnc-C9orf170-7:1
5.0 lnc-C9orf170-7:1
5.1 lnc-SECISBP2-44:1
5.2 lnc-DAPK1-7:1