Transcript: lnc-DAPP1-3:1

Basic information

LNCipedia transcript ID: lnc-DAPP1-3:1 
LNCipedia gene ID: lnc-DAPP1-3
Ensembl Gene ID: ENSG00000249710
Ensembl Transcript ID: ENST00000515782
RefSeq ID: NR_125924
Location (hg38): chr4:100190033-100215505
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 526 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000515782.1; RP11-588P8.1-001; OTTHUMT00000363433.1; NONHSAT097556; NR_125924; NR_125924.1
Alternative gene names: ENSG00000249710.1; RP11-588P8.1; OTTHUMG00000161023.1; AP001961.1; LOC101929353


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.8883 non-coding 
CPAT coding probability 4.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DAPP1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DAPP1-3:1
4.0 lnc-DAPP1-3:1
4.1 lnc-DAPP1-3:1
5.0 lnc-DAPP1-3:1
5.1 lnc-C4orf17-15:1
5.2 lnc-DAPP1-3:1