Transcript: lnc-DBX1-6:3

Basic information

LNCipedia transcript ID: lnc-DBX1-6:3 
LNCipedia gene ID: lnc-DBX1-6
Ensembl Gene ID: ENSG00000270607
Ensembl Transcript ID: ENST00000603468
Location (hg38): chr11:19710934-19712619
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1686 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT018346; ENST00000603468.1
Alternative gene names: ENSG00000270607.1; RP11-359E10.1; AC009549.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.8549 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DBX1-6:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DBX1-6:3
4.0 lnc-DBX1-6:3
4.1 lnc-DBX1-6:3
5.0 lnc-DBX1-6:3
5.1 lnc-TPH1-26:4
5.2 lnc-DBX1-6:3