Transcript: lnc-DCAF8-1:1

Basic information

LNCipedia transcript ID: lnc-DCAF8-1:1 
LNCipedia gene ID: lnc-DCAF8-1
Ensembl Gene ID: ENSG00000227741
Ensembl Transcript ID: ENST00000418602
RefSeq ID: NR_123725
Location (hg38): chr1:160202199-160208869
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1578 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000418602; ENST00000418602.1; RP11-536C5.7-001; OTTHUMT00000077411.1; NONHSAT007045; NR_123725; NR_123725.1
Alternative gene names: ENSG00000227741; RP11-536C5.7; ENSG00000227741.1; OTTHUMG00000031606.1; AL121987.2; LOC729867


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.2405 non-coding 
CPAT coding probability 6.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DCAF8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCAF8-1:1
3.1 lnc-DCAF8-1:1
4.0 lnc-DCAF8-1:1
4.1 lnc-DCAF8-1:1
5.0 lnc-DCAF8-1:1
5.1 lnc-IGSF8-1:1
5.2 lnc-DCAF8-1:1