Transcript: lnc-DCLRE1B-12:1

Basic information

LNCipedia transcript ID: lnc-DCLRE1B-12:1 
LNCipedia gene ID: lnc-DCLRE1B-12
Ensembl Gene ID: ENSG00000231128
Ensembl Transcript ID: ENST00000418238
Location (hg38): chr1:113812608-113815476
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 422 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418238.1; RP5-1073O3.2-002; OTTHUMT00000033025.1; NONHSAT005337
Alternative gene names: ENSG00000231128.1; RP5-1073O3.2; OTTHUMG00000011939.2; ENSG00000231128.5; ; AL137856.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -170.3674 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DCLRE1B-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DCLRE1B-2:2
4.0 AP4B1-AS1:2
4.1 AP4B1-AS1:2
5.0 AP4B1-AS1:2
5.1 lnc-DCLRE1B-11:1
5.2 lnc-DCLRE1B-12:1