Transcript: lnc-DDR2-5:1

Basic information

LNCipedia transcript ID: lnc-DDR2-5:1 
LNCipedia gene ID: lnc-DDR2-5
Ensembl Gene ID: ENSG00000272574
Ensembl Transcript ID: ENST00000609669
Location (hg38): chr1:162593103-162593754
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 505 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609669.1
Alternative gene names: ENSG00000272574.1; RP11-359K18.4; AL596325.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -291.7875 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDR2-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDR2-5:1
4.0 lnc-DDR2-5:1
4.1 lnc-DDR2-5:1
5.0 lnc-DDR2-5:1
5.1 lnc-PCP4L1-22:1
5.2 lnc-DDR2-5:1