Transcript: lnc-DDX11-4:2

Basic information

LNCipedia transcript ID: lnc-DDX11-4:2 
LNCipedia gene ID: lnc-DDX11-4
Ensembl Gene ID: ENSG00000177340
Ensembl Transcript ID: ENST00000313737
Location (hg38): chr12:31324316-31325829
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1514 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000313737.5
Alternative gene names: ENSG00000177340.5; FLJ13224; AC024940.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.9843 non-coding 
CPAT coding probability 59.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DDX11-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC024940.1-1:2
4.1 lnc-AC024940.1-1:2
5.0 lnc-AC024940.1-1:2
5.1 lnc-KIAA1551-23:2
5.2 lnc-DDX11-4:2