Transcript: lnc-DDX18-1:4

Basic information

LNCipedia transcript ID: lnc-DDX18-1:4 
LNCipedia gene ID: lnc-DDX18-1
Ensembl Gene ID: ENSG00000236255
Ensembl Transcript ID: ENST00000445332
Location (hg38): chr2:117837744-117839389
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002987; ENST00000445332; ENST00000445332.1; AC009404.2-001; OTTHUMT00000129611.1; NONHSAT073902
Alternative gene names: XLOC_001636; linc-INSIG2-2; ENSG00000236255; AC009404.2; ENSG00000236255.1; OTTHUMG00000058513.2; AC009404.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.6225 non-coding 
CPAT coding probability 5.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDX18-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DDX18-1:4
3.1 lnc-DDX18-1:4
4.0 lnc-DDX18-1:4
4.1 lnc-DDX18-1:4
5.0 lnc-DDX18-1:4
5.1 lnc-MARCO-2:7
5.2 lnc-DDX18-1:4