Transcript: lnc-DDX27-4:1

Basic information

LNCipedia transcript ID: lnc-DDX27-4:1 
LNCipedia gene ID: lnc-DDX27-4
Location (hg38): chr20:49318779-49332014
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 383 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028210; NONHSAT080218
Alternative gene names: XLOC_013555; linc-SLC9A8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.4971 non-coding 
CPAT coding probability 26.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDX27-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DDX27-4:1
3.1 lnc-DDX27-4:1
4.0 lnc-DDX27-4:1
4.1 lnc-DDX27-4:1
5.0 lnc-DDX27-4:1
5.1 lnc-SNAI1-28:7
5.2 lnc-DDX27-4:1