Transcript: lnc-DDX3X-2:2

Basic information

LNCipedia transcript ID: lnc-DDX3X-2:2 
LNCipedia gene ID: lnc-DDX3X-2
Location (hg38): chrX:41233633-41234283
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 651 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT136720; ENST00000602481.1
Alternative gene names: ENSG00000269941.1; RP5-1172N10.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.0088 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDX3X-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP9X-2:1
4.0 lnc-USP9X-2:1
4.1 lnc-USP9X-2:1
5.0 lnc-USP9X-2:1
5.1 lnc-CHST7-61:1
5.2 lnc-DDX3X-2:2