Transcript: lnc-DDX53-1:1

Basic information

LNCipedia transcript ID: lnc-DDX53-1:1 
LNCipedia gene ID: lnc-DDX53-1
Ensembl Gene ID: ENSG00000237019
Ensembl Transcript ID: ENST00000442155
Location (hg38): chrX:22698457-22768966
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 382 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00016972; ENST00000442155; ENST00000442155.1; GS1-433O24.1-001; OTTHUMT00000056041.1; NONHSAT136484
Alternative gene names: XLOC_007943; linc-DDX53; ENSG00000237019; GS1-433O24.1; ENSG00000237019.1; OTTHUMG00000021246.1; AC004470.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -171.6076 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDX53-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DDX53-1:1
3.1 lnc-DDX53-1:1
4.0 lnc-DDX53-1:1
4.1 lnc-DDX53-1:1
5.0 lnc-DDX53-1:1
5.1 lnc-GK-78:1
5.2 lnc-DDX53-1:1