Transcript: lnc-DDX60-1:1

Basic information

LNCipedia transcript ID: lnc-DDX60-1:1 
LNCipedia gene ID: lnc-DDX60-1
Ensembl Gene ID: ENSG00000248601
Ensembl Transcript ID: ENST00000506926
Location (hg38): chr4:167946674-168113331
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 447 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506926.1; RP11-310I9.1-001; OTTHUMT00000364349.2; NONHSAT099127
Alternative gene names: ENSG00000248601.1; RP11-310I9.1; OTTHUMG00000161276.2; AC116634.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.0779 non-coding 
CPAT coding probability 3.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DDX60-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDX60-1:1
4.0 lnc-DDX60-1:1
4.1 lnc-DDX60-1:1
5.0 lnc-DDX60-1:1
5.1 lnc-CBR4-7:1
5.2 lnc-DDX60-1:1