Transcript: lnc-DEAF1-2:1

Basic information

LNCipedia transcript ID: lnc-DEAF1-2:1 
LNCipedia gene ID: lnc-DEAF1-2
Ensembl Gene ID: ENSG00000269915
Ensembl Transcript ID: ENST00000527021
Location (hg38): chr11:708564-727047
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 532 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT017306; ENST00000527021.2
Alternative gene names: ENSG00000269915.1; AP006621.9; AP006621.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.6115 non-coding 
CPAT coding probability 39.82% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DEAF1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DEAF1-2:1
4.0 lnc-DEAF1-2:1
4.1 lnc-DEAF1-2:1
5.0 lnc-DEAF1-2:1
5.1 lnc-OR52A1-86:1
5.2 lnc-DEAF1-2:1