Transcript: lnc-DEFB115-40:1

Basic information

LNCipedia transcript ID: lnc-DEFB115-40:1 
LNCipedia gene ID: lnc-DEFB115-40
RefSeq ID: NR_134504
Location (hg38): chr20:29448517-29458181
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1886 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134504.1
Alternative gene names: LOC105379477


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DEFB115-40:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-BPIFB2-40:1
5.1 lnc-BPIFB2-40:1
5.2 lnc-DEFB115-40:1