Transcript: lnc-DEFB115-4:1

Basic information

LNCipedia transcript ID: lnc-DEFB115-4:1 
LNCipedia gene ID: lnc-DEFB115-4
Location (hg38): chr20:30403570-30407116
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 940 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000446917; ENST00000446917.1; RP11-348I14.4-001; OTTHUMT00000078488.1; NONHSAT079281
Alternative gene names: ENSG00000223346; RP11-348I14.4; ENSG00000223346.1; OTTHUMG00000032153.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9754 non-coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DEFB115-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRG1B-1:1
3.1 lnc-FRG1B-1:1
4.0 lnc-FRG1B-1:1
4.1 lnc-FRG1B-1:1
5.0 lnc-FRG1B-1:1
5.1 lnc-BPIFB2-37:1
5.2 lnc-DEFB115-4:1