Transcript: lnc-DEFB119-1:3

Basic information

LNCipedia transcript ID: lnc-DEFB119-1:3 
LNCipedia gene ID: lnc-DEFB119-1
Location (hg38): chr20:31377163-31390649
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 581 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT079289; NR_073151
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 89.4744 coding 
CPAT coding probability 16.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DEFB119-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DEFB119-1:3
4.0 lnc-DEFB119-1:3
4.1 lnc-DEFB119-1:3
5.0 lnc-DEFB119-1:3
5.1 lnc-MMP24OS-68:1
5.2 lnc-DEFB119-1:3